Preview

Yakut Medical Journal

Advanced search

Autosomal dominant spastic paraplegia in four generations of Yakut family linked to dynamin 2 mutation

https://doi.org/10.25789/YMJ.2020.69.01

Abstract

The article presents the results of a clinical and genetic study of a Yakut family with hereditary spastic paraplegia (HSP). Patients with clinically diagnosed HSP and healthy family members were studied. The disease is clinically characterized as a progressive spastic paraplegia of the lower extremities concomitant peripheral neuropathy in advanced case. The methods of exome sequencing of the entire genome, molecular modeling of dynamin-2 and experimental reproduction of key elements of the HSP pathogenesis have been applied. Genetic analysis revealed a novel missense c.2155C> T, p.R719W mutation in the highly conserved GTP-effector domain of the dynamin-2 gene (DNM2). In experiments on HeLa cells, it was shown that mutant dynamin-2 affected endocytosis process. In-silico modeling determined that the identified mutation is located in the DNM2 bundle-signaling element and potentially disrupts the assembly and functional properties of the protein. Testing of this mutation in other Yakut families with HSP showed a negative result, which once again confirms the genetic heterogeneity of this pathology.

About the Authors

T. M. Sivtseva
Medical Institute of the M.K. Ammosov North-Eastern Federal University
Russian Federation

SIVTSEVA Tatiana Mikhailovna - PhD, Senior Researcher, Research Center

Yakutsk, 677000



L. G. Goldfarb
National Institute of Health
United States

GOLDFARB Lev Gertsevich – PhD

Bethesda, MD 20892, USA



T. K. Davydova
Yakut science centre of complex medical problems
Russian Federation

DAVYDOVA Tatiana Kimovna – PhD

Yakutsk



N. Sambuughin
Uniformed Services University of the Health Sciences
United States

SAMBUUGHIN Nyamkhishig – PhD

Bethesda, Maryland 20892, USA



C. Toro
National Institute of Health
United States

TORO Camilo - PhD

Bethesda, MD 20892, USA



A. C. Sundborger
National Institute of Health
United States

SUNDBORGER Anna C - PhD

Bethesda, MD 20892, USA



F. A. Platonov
Medical Institute of the M.K. Ammosov North-Eastern Federal University
Russian Federation

PLATONOV Fyodor Alexeevich - PhD, Research Center

Yakutsk, 677000



N. M. Renwick
Queen’s University
Canada

RENWICK Neil M – PhD, head of laboratory, Department of Pathology and Molecular Medicine



Kh. Kurtanov
Yakut science centre of complex medical problems
Russian Federation

KURTANOV Khariton – PhD

Yakutsk



A. T. Diakonova
Yakut science centre of complex medical problems
Russian Federation

DIAKONOVA Alexandra Timofeevna 

Yakutsk



E. E. Konnikova
Medical Institute of the M.K. Ammosov North-Eastern Federal University
Russian Federation

KONNIKOVA Ediliya Eduardovna – Senior Researcher

Yakutsk



M. A. Varlamova
Yakut science centre of complex medical problems
Russian Federation

VARLAMOVA Marina Alexeevna 

Yakutsk



A. E. Adamova
Yakut science centre of complex medical problems
Russian Federation

ADAMOVA Alina Evgenievna 

Yakutsk



O. G. Sidorova
Yakut science centre of complex medical problems
Russian Federation

SIDOROVA Oksana Gavrilievna

Yakutsk



J. E. Hinshaw
National Institutes of Health
United States

HINSHAW Jenny E – PhD

Bethesda, MD 20892, USA



V. L. Osakovsky
Medical Institute of the M.K. Ammosov North-Eastern Federal University
Russian Federation

OSAKOVSKIY Vladimir Leonidovich - PhD, Chief Researcher, Research Center

Yakutsk



References

1. Nikolaeva T.Ya. The dynamics of the spectrum of hereditary diseases of the nervous system in the Republic of Sakha (Yakutia). / T.Ya. Nikolaeva, T.E. Popova, Z.M. Kuzmina //The problem of Viliuisk encephalomyelitis and degenerative brain diseases in Yakutia. Abstracts of the IV International Scientific and Practical Conference. August 24-26, 2011. Yakutsk. - P. 65-67.

2. A dynamin mutant defines a superconstricted prefission state / AC Sundborger, S Fang, JA Heymann, et.al. // Cell Rep. – 2014. – 8. – P. 734-742. doi: 10.1016/j.celrep.2014.06.054.

3. A pseudoatomic model of the dynamin polymer identifies a hydrolysis-dependent power-stroke. / JS Chappie, JA Mears, S Fang, et.al. // Cell. – 2011. – 147. – P. 209–222. doi: 10.1016/j.cell.2011.09.003.

4. Analysis of DNA sequence variants detected by high-throughput sequencing / DR Adams, M. Sincan, K. Fuentes Fajardo, et al. // Hum Mutat. – 2012. – 33. - P. 599-608. doi: 10.1002/humu.22035

5. Blackstone C. Cellular pathways of hereditary spastic paraplegia / C. Blackstone // Annu Rev Neurosci. – 2012. – 35. – P. 25-47. doi: 10.1146/annurev-neuro-062111-150400

6. Characterization of the muscle involvement in dynamin 2-related centronuclear myopathy / D Fischer, M Herasse, M Bitoun, et.al. // Brain. – 2006. – 129. – P. 1463-1469. DOI: 10.1093/brain/awl071

7. Crystal structure of nucleotide-free dynamin / K Faelber, Y Posor, S Gao , et.al. // Nature. – 2011. – 477. – P. 556-560. doi: 10.1038/nature10369.

8. Domain structure and intramolecular regulation of dynamin GTPase / A.B. Muhlberg, D.E. Warnock, S.L. Schmid // EMBO J. – 1997. – 16. – P. 6676-6683. DOI: 10.1093/emboj/16.22.6676

9. Dynamin 2 mutations associated with human diseases impair clathrin-mediated receptor endocytosis. / M. Bitoun, AC Durieux, B Prudhon, et.al. // Hum Mutat. - 2009. – 30. – P. 1419–1427. doi: 10.1002/humu.21086.

10. Fink J.K. Hereditary spastic paraplegia: clinical principles and genetic advances / J.K. Fink // Semin Neurol. – 2014. – 34. – P. 293-305. doi: 10.1055/s-0034-1386767

11. G domain dimerization controls dynamin’s assembly-stimulated GTPase activity. / JS Chappie, S Acharya, M Leonard, et.al. // Nature. – 2010. – 465. – P. 435–440. doi: 10.1038/nature09032

12. I-TASSER: a unified platform for automated protein structure and function prediction. / A Roy, A Kucukural, Y Zhang // Nature Protocols. – 2010. – 5. – P. 725-738. doi: 10.1038/nprot.2010.5.

13. Kenniston J.A., Lemmon M.A. Dynamin GTPase regulation is altered by PH domain mutations found in centronuclear myopathy patients / J.A. Kenniston, M.A. Lemmon // EMBO J. – 2010. – 29. – P.3054–3067. doi: 10.1038/emboj.2010.187.

14. Mild functional differences of dynamin 2 mutations associated to Centronuclaer myopathy and Charcot-Marie-Tooth peripheral neuropathy / OS Koutspoulos, C Koch, V Tosch, et.al. // PloS One. – 2011. – 6. - e277498. doi: 10.1371/journal.pone.0027498.

15. MRI in DNM2-related centronuclear myopathy: evidence for highly selective muscle involvement / J Schessl , L Medne , Y Hu, et.al. // Neuromuscul Disord. – 2007. – 17. –P.28-32. DOI: 10.1016/j.nmd.2006.09.013

16. Mutations in dynamin 2 cause dominant centronuclear myopathy / M. Bitoun, S. Maugenre, PY Jeannet, et. al. //Nat Genet. – 2005. – 37. - P. 1207–1209. DOI: 10.1038/ng1657

17. Neumann S. Dual role of BAR domaincontaining proteins in regulating vesicle release catalyzed by the GTPase, dynamin-2 / S. Neumann, S.L. Schmid // J Biol Chem. – 2013. – 288. – P. 25119-25128. doi: 10.1074/jbc.M113.490474

18. Overlapping molecular pathological themes link Charcot-Marie-Tooth neuropathies and hereditary spastic paraplegias / V Timmerman, VE Clowes, E Reid // Exp Neurol. – 2013. – 246. – P.14-25. doi: 10.1016/j.expneurol.2012.01.010.

19. Overlapping role of dynamin isoforms in synaptic vesicle endocytosis./ A Raimondi, SM Ferguson, X Lou, et.al. // Neuron. – 2011. – 70. – P.1100-1114. doi: 10.1016/j.neuron.2011.04.031

20. Pharmacologic rescue of axon growth defects in a human iPSC model of hereditary spastic paraplegia SPG3A / PP Zhu, KR Denton, TM Pierson, et.al. // Hum Mol Genet. – 2014. – 23. – P. 5638-5648. doi: 10.1093/hmg/ddu280.

21. Phenotypic spectrum of dynamin 2 mutations in Charcot-Marie-Tooth neuropathy / KG Claeys, S Züchner, M Kennerson, et.al. // Brain. – 2009. – 132. – P. 1741-1752. doi: 10.1093/brain/awp115

22. Praefcke G.J. The dynamin superfamily: universal membrane abulation and fission molecules? / GJ Praefcke, HT McMahon // Nature Rev Mol Cell Biol. – 2004. – 5. – P. 133-147. DOI: 10.1038/nrm1313

23. Predicting the effects of coding nonsynonymous variants on protein function using the SIFT algorithm / P. Kumar, S. Henikoff , P.C. Ng // Nat Protoc. – 2009. – 4. – P.1073-1081. doi: 10.1038/nprot.2009.86.

24. Romero N.B. Centronuclear myopathies / N.B. Romero, M. Bitoun // Semin Pediatr Neurol. – 2011. – 18. – P.250-256. doi: 10.1016/j.spen.2011.10.006.

25. The I-TASSER Suite: Protein structure and function prediction / J Yang , R Yan , A Roy, et.al. // Nature Methods. – 2015. – 12. – P. 7-8. doi: 10.1038/nmeth.3213.

26. The phenotype of “pure” autosomal dominant spastic paraplegia / A Durr, A Brice, M Serdaru, et.al. // Neurology. – 1994. – 44. – P. 1274–1277. DOI: 10.1212/wnl.44.7.1274

27. Two novel mutations in dynamin-2 cause axonal Charcot-Marie-Tooth disease / GM Fabrizi, M Ferrarini, T Cavallaro, et.al. // Neurology. – 2007. – 69. – P. 291-295. DOI: 10.1212/01.wnl.0000265820.51075.61

28. UCSF Chimera—a visualization system for exploratory research and analysis / E.F. Pettersen, T.D. Goddard, C.C. Huang, et.al. // J Comput Chem. – 2004. – 25. – P. 1605–1612. DOI: 10.1002/jcc.20084

29. Zhang Y. I-TASSER server for protein 3D structure prediction / Y. Zhang // BMC Bioinformatics. – 2008. – 9. - 40. doi: 10.1186/1471-2105-9-40.


Review

For citations:


Sivtseva T.M., Goldfarb L.G., Davydova T.K., Sambuughin N., Toro C., Sundborger A.C., Platonov F.A., Renwick N.M., Kurtanov Kh., Diakonova A.T., Konnikova E.E., Varlamova M.A., Adamova A.E., Sidorova O.G., Hinshaw J.E., Osakovsky V.L. Autosomal dominant spastic paraplegia in four generations of Yakut family linked to dynamin 2 mutation. Yakut Medical Journal. 2020;(1):6-12. https://doi.org/10.25789/YMJ.2020.69.01

Views: 26

JATS XML


Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.


ISSN 1813-1905 (Print)
ISSN 2312-1017 (Online)